STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0032_0131DUSP domain-containing protein. (463 aa)    
Predicted Functional Partners:
Esi_0063_0073
Uncharacterized protein.
   
 0.695
Esi_0302_0019
Similar to ubiquitin.
    
 0.587
Esi_0010_0201
Uncharacterized protein.
    
 0.587
Esi_0023_0071
Similar polyubiquitin.
    
 0.587
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
    
 
 0.582
rpl6
50S ribosomal protein L6, chloroplastic; Binds 23S rRNA.
    
 
 0.568
rps2
30S ribosomal protein S2, chloroplastic.
    
 
 0.563
rps17
30S ribosomal protein S17, chloroplastic; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.561
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
    
 
 0.550
rpl36
50S ribosomal protein L36, chloroplastic.
    
 
 0.544
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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