Esi_0833_0001 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0833_0001

Carrier domain-containing protein. (604 aa)

Predicted Functional Partners:

Esi_0083_0032

0.841

mxcG

0.810

Esi_0006_0085

0.796

ACP

0.795

ACP-2

0.795

ACP-3

0.795

ICS

0.775

Esi_0089_0087

0.770

Esi_0014_0168

0.770

rpl6

0.751

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACP	Esi_0006_0085	D7FHN4	D8LQF8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.885
ACP	Esi_0014_0168	D7FHN4	D8LF03	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acetyl-coenzyme A synthetase.	0.667
ACP	Esi_0089_0087	D7FHN4	D7G8I3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acetoacetate--CoA ligase.	0.667
ACP	Esi_0833_0001	D7FHN4	D7G7J4	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Carrier domain-containing protein.	0.795
ACP	ICS	D7FHN4	D8LMF2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Similar to Isochorismate Synthase.	0.786
ACP	mxcG	D7FHN4	D8LQP2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Nonribosomal peptide synthetase 10.	0.885
ACP-2	Esi_0006_0085	D7FUM5	D8LQF8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.885
ACP-2	Esi_0014_0168	D7FUM5	D8LF03	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acetyl-coenzyme A synthetase.	0.667
ACP-2	Esi_0089_0087	D7FUM5	D7G8I3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acetoacetate--CoA ligase.	0.667
ACP-2	Esi_0833_0001	D7FUM5	D7G7J4	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Carrier domain-containing protein.	0.795
ACP-2	ICS	D7FUM5	D8LMF2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Similar to Isochorismate Synthase.	0.786
ACP-2	mxcG	D7FUM5	D8LQP2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Nonribosomal peptide synthetase 10.	0.885
ACP-3	Esi_0006_0085	D7G7V6	D8LQF8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.885
ACP-3	Esi_0014_0168	D7G7V6	D8LF03	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acetyl-coenzyme A synthetase.	0.667
ACP-3	Esi_0089_0087	D7G7V6	D7G8I3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acetoacetate--CoA ligase.	0.667
ACP-3	Esi_0833_0001	D7G7V6	D7G7J4	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Carrier domain-containing protein.	0.795
ACP-3	ICS	D7G7V6	D8LMF2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Similar to Isochorismate Synthase.	0.786
ACP-3	mxcG	D7G7V6	D8LQP2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Nonribosomal peptide synthetase 10.	0.885
Esi_0006_0085	ACP	D8LQF8	D7FHN4	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.885
Esi_0006_0085	ACP-2	D8LQF8	D7FUM5	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.885