STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0186_0022DEAD box helicase; Belongs to the DEAD box helicase family. (699 aa)    
Predicted Functional Partners:
Snu114
Snu114, GTPase of the U5 snRNP particle.
  
 0.982
Esi_0363_0004
N/a.
   
   0.939
Esi_0021_0125
DEAD box helicase.
  
0.909
Esi_0107_0043
PRP1_N domain-containing protein.
    
  0.908
Esi_0013_0072
Pre-mRNA splicing factor, putative.
    
  0.908
Esi_0013_0073
Uncharacterized protein.
    
  0.908
Esi_0043_0119
Uncharacterized protein.
    
  0.908
atpA
ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
  
 
 0.906
Esi_0026_0111
Uncharacterized protein; Belongs to the ATPase alpha/beta chains family.
  
 
 0.906
atpB
ATP synthase subunit beta, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
  
 
 0.904
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.