Esi_0036_0093 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0036_0093

UBX domain-containing protein. (676 aa)

Predicted Functional Partners:

Esi_0014_0173

0.967

Esi_0041_0124

0.961

Esi_0070_0117

0.961

Esi_0071_0018

0.936

Esi_0211_0012

0.921

Esi_0018_0041

0.901

Esi_0246_0005

0.901

Esi_0152_0032

0.901

Esi_0009_0093

0.901

Esi_0180_0032

0.846

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0009_0093	Esi_0014_0173	D8LTQ5	D8LF06	Uncharacterized protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.586
Esi_0009_0093	Esi_0036_0093	D8LTQ5	D8LLD2	Uncharacterized protein.	UBX domain-containing protein.	0.901
Esi_0009_0093	Esi_0041_0124	D8LTQ5	D8LMW6	Uncharacterized protein.	Uncharacterized protein.	0.912
Esi_0009_0093	Esi_0070_0117	D8LTQ5	D8LS99	Uncharacterized protein.	NPL4 domain-containing protein.	0.912
Esi_0009_0093	Esi_0071_0018	D8LTQ5	D7G613	Uncharacterized protein.	PUB domain, zinc finger protein Thioredoxin.	0.431
Esi_0009_0093	Esi_0211_0012	D8LTQ5	D7FR68	Uncharacterized protein.	Uncharacterized protein.	0.726
Esi_0014_0173	Esi_0009_0093	D8LF06	D8LTQ5	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Uncharacterized protein.	0.586
Esi_0014_0173	Esi_0018_0041	D8LF06	D7FNH0	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Uncharacterized protein.	0.586
Esi_0014_0173	Esi_0036_0093	D8LF06	D8LLD2	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	UBX domain-containing protein.	0.967
Esi_0014_0173	Esi_0041_0124	D8LF06	D8LMW6	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Uncharacterized protein.	0.648
Esi_0014_0173	Esi_0070_0117	D8LF06	D8LS99	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	NPL4 domain-containing protein.	0.648
Esi_0014_0173	Esi_0152_0032	D8LF06	D8LFW5	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Putative ubiquitin fusion-degradation protein.	0.586
Esi_0014_0173	Esi_0180_0032	D8LF06	D7FNU5	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C; Belongs to the SKP1 family.	0.693
Esi_0014_0173	Esi_0246_0005	D8LF06	D7FT74	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	UBX domain-containing protein.	0.586
Esi_0018_0041	Esi_0014_0173	D7FNH0	D8LF06	Uncharacterized protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.586
Esi_0018_0041	Esi_0036_0093	D7FNH0	D8LLD2	Uncharacterized protein.	UBX domain-containing protein.	0.901
Esi_0018_0041	Esi_0041_0124	D7FNH0	D8LMW6	Uncharacterized protein.	Uncharacterized protein.	0.912
Esi_0018_0041	Esi_0070_0117	D7FNH0	D8LS99	Uncharacterized protein.	NPL4 domain-containing protein.	0.912
Esi_0018_0041	Esi_0071_0018	D7FNH0	D7G613	Uncharacterized protein.	PUB domain, zinc finger protein Thioredoxin.	0.431
Esi_0018_0041	Esi_0211_0012	D7FNH0	D7FR68	Uncharacterized protein.	Uncharacterized protein.	0.726