STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0038_0066MSP domain-containing protein. (308 aa)    
Predicted Functional Partners:
Esi_0234_0033
Uncharacterized protein.
    
 0.875
Esi_0368_0019
START domain-containing protein.
    
 0.875
SNR19
Soluble NSF Attachment Protein (SNAP) Receptor (SNARE).
    
 0.722
SNR7
Soluble NSF Attachment Protein (SNAP) Receptor (SNARE).
    
 0.722
Esi_0145_0005
BZIP domain-containing protein.
     
 0.713
SNR11
Soluble NSF Attachment Protein (SNAP) Receptor (SNARE).
    
 0.695
RAC
RAC, RHO family GTPase.
    
 0.691
OST48
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]
    
 0.659
Esi_0064_0104
Uncharacterized protein.
   
 0.645
SNR6
Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein; Belongs to the synaptobrevin family.
    
 0.602
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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