Esi_0069_0021 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0069_0021

TFIIS N-terminal domain-containing protein. (622 aa)

Predicted Functional Partners:

Esi_0113_0015

0.984

Esi_0006_0211

0.981

Esi_0006_0213

0.981

Esi_0002_0036

0.976

Esi_0107_0021

0.958

Esi_0509_0003

0.942

Esi_0117_0017

0.938

Esi_0010_0190

0.938

Esi_0125_0049

0.936

Esi_0372_0003

0.935

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0002_0036	Esi_0006_0211	D7FPY1	D8LQN4	FACT complex subunit SPT16.	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	0.981
Esi_0002_0036	Esi_0006_0213	D7FPY1	D8LQN5	FACT complex subunit SPT16.	Similar to putative chromatin structure regulator.	0.981
Esi_0002_0036	Esi_0010_0190	D7FPY1	D8LC61	FACT complex subunit SPT16.	Putative copper transporter.	0.978
Esi_0002_0036	Esi_0069_0021	D7FPY1	D8LRK3	FACT complex subunit SPT16.	TFIIS N-terminal domain-containing protein.	0.976
Esi_0002_0036	Esi_0107_0021	D7FPY1	D7FHB9	FACT complex subunit SPT16.	RPOLD domain-containing protein.	0.989
Esi_0002_0036	Esi_0113_0015	D7FPY1	D8LD30	FACT complex subunit SPT16.	Similar to RNA Polymerase II CTD phosphatase Fcp1, putative.	0.761
Esi_0002_0036	Esi_0117_0017	D7FPY1	D7FI29	FACT complex subunit SPT16.	Transcription elongation factor SPT5.	0.978
Esi_0002_0036	Esi_0125_0049	D7FPY1	D7FJ11	FACT complex subunit SPT16.	Uncharacterized protein.	0.993
Esi_0002_0036	Esi_0372_0003	D7FPY1	D8LLT9	FACT complex subunit SPT16.	Plus3 domain-containing protein.	0.984
Esi_0002_0036	Esi_0509_0003	D7FPY1	D7G3E5	FACT complex subunit SPT16.	Spt4 domain-containing protein.	0.989
Esi_0006_0211	Esi_0002_0036	D8LQN4	D7FPY1	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	FACT complex subunit SPT16.	0.981
Esi_0006_0211	Esi_0010_0190	D8LQN4	D8LC61	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	Putative copper transporter.	0.920
Esi_0006_0211	Esi_0069_0021	D8LQN4	D8LRK3	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	TFIIS N-terminal domain-containing protein.	0.981
Esi_0006_0211	Esi_0107_0021	D8LQN4	D7FHB9	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	RPOLD domain-containing protein.	0.937
Esi_0006_0211	Esi_0113_0015	D8LQN4	D8LD30	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	Similar to RNA Polymerase II CTD phosphatase Fcp1, putative.	0.733
Esi_0006_0211	Esi_0117_0017	D8LQN4	D7FI29	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	Transcription elongation factor SPT5.	0.920
Esi_0006_0211	Esi_0125_0049	D8LQN4	D7FJ11	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	Uncharacterized protein.	0.949
Esi_0006_0211	Esi_0372_0003	D8LQN4	D8LLT9	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	Plus3 domain-containing protein.	0.927
Esi_0006_0211	Esi_0509_0003	D8LQN4	D7G3E5	GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto.	Spt4 domain-containing protein.	0.938
Esi_0006_0213	Esi_0002_0036	D8LQN5	D7FPY1	Similar to putative chromatin structure regulator.	FACT complex subunit SPT16.	0.981