Esi_0076_0114 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0076_0114

Uncharacterized protein. (3051 aa)

Predicted Functional Partners:

Esi_0020_0083

0.994

Esi_0008_0074

0.886

Esi_0022_0115

0.869

Esi_0002_0124

0.775

MCPK

0.775

Esi_0375_0008

0.775

Esi_0128_0037

0.775

Esi_0101_0095

0.772

Esi_0002_0285

0.772

Esi_0145_0026

0.768

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0002_0124	Esi_0002_0285	D7FQ29	D7FQC9	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	SMC_N domain-containing protein.	0.783
Esi_0002_0124	Esi_0008_0074	D7FQ29	D7G6X5	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Separin.	0.838
Esi_0002_0124	Esi_0022_0115	D7FQ29	D8LIH5	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	HORMA domain protein.	0.871
Esi_0002_0124	Esi_0076_0114	D7FQ29	D8LSU3	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.775
Esi_0002_0124	Esi_0101_0095	D7FQ29	D7FGT8	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2).	0.783
Esi_0002_0124	Esi_0145_0026	D7FQ29	D8LF93	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.487
Esi_0002_0124	Esi_0375_0008	D7FQ29	D7FZI9	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	BUB1 N-terminal domain-containing protein.	0.786
Esi_0002_0124	MCPK	D7FQ29	D7FW66	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Serine/threonine-prot.	0.786
Esi_0002_0285	Esi_0002_0124	D7FQC9	D7FQ29	SMC_N domain-containing protein.	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.783
Esi_0002_0285	Esi_0008_0074	D7FQC9	D7G6X5	SMC_N domain-containing protein.	Separin.	0.807
Esi_0002_0285	Esi_0022_0115	D7FQC9	D8LIH5	SMC_N domain-containing protein.	HORMA domain protein.	0.666
Esi_0002_0285	Esi_0076_0114	D7FQC9	D8LSU3	SMC_N domain-containing protein.	Uncharacterized protein.	0.772
Esi_0002_0285	Esi_0128_0037	D7FQC9	D8LDX8	SMC_N domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.783
Esi_0002_0285	Esi_0145_0026	D7FQC9	D8LF93	SMC_N domain-containing protein.	Uncharacterized protein.	0.949
Esi_0002_0285	Esi_0375_0008	D7FQC9	D7FZI9	SMC_N domain-containing protein.	BUB1 N-terminal domain-containing protein.	0.595
Esi_0002_0285	MCPK	D7FQC9	D7FW66	SMC_N domain-containing protein.	Serine/threonine-prot.	0.595
Esi_0008_0074	Esi_0002_0124	D7G6X5	D7FQ29	Separin.	Kinesin motor protein-related; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.838
Esi_0008_0074	Esi_0002_0285	D7G6X5	D7FQC9	Separin.	SMC_N domain-containing protein.	0.807
Esi_0008_0074	Esi_0020_0083	D7G6X5	D8LHV9	Separin.	Putative: silimar to centromere/kinetochore protein zw10 homolog.	0.761
Esi_0008_0074	Esi_0022_0115	D7G6X5	D8LIH5	Separin.	HORMA domain protein.	0.858