STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiEAliphatic amidase (amiE); Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia. (345 aa)    
Predicted Functional Partners:
nthB
Nitrile hydratase subunit beta (Nitrilase) (NHase); NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.
     
 0.932
xylC
Benzaldehyde dehydrogenase (NAD+); Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic; PUBMED: 7868591, 1989592; Belongs to the aldehyde dehydrogenase family.
   
 0.912
nthA
Nitrile hydratase subunit alpha (Nitrilase) (NHase); Evidence: Function of strongly homologous gene.
     
 0.907
BBta_0747
benzoate-CoA ligase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
 
  0.905
badA
benzoate-CoA ligase; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic; PUBMED: 7592432.
  
 
  0.905
paaI
Phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
  
 
  0.903
nitA
Aliphatic nitrilase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
     
 0.903
BBta_4900
Putative Acylphosphatase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
  0.902
paaK
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
     
  0.900
BBta_5720
Putative Phenylacetate-CoA ligase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
  0.900
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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