STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acdS1-aminocyclopropane-1-carboxylate deaminase; Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source; Belongs to the ACC deaminase/D-cysteine desulfhydrase family. (339 aa)    
Predicted Functional Partners:
BBta_4128
Transcriptional regulator, AsnC family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
 
   
 0.677
hemA
5-aminolevulinate synthase; Evidence: Function of strongly homologous gene.
      
 0.426
hemA-2
5-aminolevulinate synthase; Evidence: Function of strongly homologous gene.
      
 0.426
hemA-3
5-aminolevulinate synthase; Evidence: Function of homologous gene experimentally demonstrated in an other organism.
      
 0.426
BBta_4126
Putative membrane protein of unknown function; Evidence: No homology to any previously reported sequences.
       0.416
BBta_1921
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
  
     0.412
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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