STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degP-2DegP2 peptidase, Serine peptidase, MEROPS family S01B; Evidence: Function of strongly homologous gene; Localization: 9 : Periplasmic; PUBMED: 9507020. (374 aa)    
Predicted Functional Partners:
BBta_3766
Serine protease; Evidence: Function of strongly homologous gene; Localization: 9 : Periplasmic.
  
     0.663
BBta_3894
Putative sensor histidine kinase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.568
BBta_4316
Histidine kinase; Modular protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.568
BBta_7792
Kef-type potassium/proton antiporter, CPA2 family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane; PUBMED: 2046548; TC 2.A.37.1; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.552
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.526
BBta_6262
Putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.519
BBta_1089
Putative Non-ribosomal peptide synthase; Amino acid adenylation; modular protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.504
BBta_4915
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
       0.449
BBta_1136
Histidine kinase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.439
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.435
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.