STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_5566Putative transport protein, MFS superfamily; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein. (432 aa)    
Predicted Functional Partners:
BBta_1822
Hypothetical protein; Amidohydrolase (metal-dependent) domain; Evidence: Similar to previously reported genes of unknown function.
  
  
 0.808
ttuC
Tartrate dehydrogenase/decarboxylase; Localization: 2 : Cytoplasmic; Evidence: Function of homologous gene experimentally demonstrated in an other organism.
     
 0.736
BBta_1167
Putative Dihydrodipicolinate synthetase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the DapA family.
  
  
 0.701
BBta_6698
Putative dihydrodipicolinate synthase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic; Belongs to the DapA family.
  
  
 0.701
BBta_0687
Putative permease of the Major Facilitator Superfamily; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein.
  
  
 0.656
BBta_5586
Putative Permease of the major facilitator superfamily; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein.
 
     0.630
BBta_5567
Transcriptional regulator ttuA (Tartrate utilization transcriptional regulator); Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
 
    0.611
ttuE
Pyruvate kinase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the pyruvate kinase family.
       0.454
BBta_0036
Putative pfkB family carbohydrate kinase; Putative Adenosine kinase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
  
 0.450
BBta_2940
Putative 5-carboxymethyl-2-hydroxymuconate isomerase, HpcD-like protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
    0.450
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.