STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acsFMg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. (353 aa)    
Predicted Functional Partners:
bchM
Mg-protoporphyrin IX methyl transferase; Evidence: Function of homologous gene experimentally demonstrated in an other organism.
 
 
 0.998
bchB
Protochlorophyllide reductase BchB subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
 
 0.987
bchH
Cobaltochelatase CobN subunit; Evidence: Function of homologous gene experimentally demonstrated in an other organism.
 
  
 0.984
bchN
Protochlorophyllide reductase subunit BchN; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
 
 0.983
BBta_6408
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
 
    0.979
puhA
Reaction center protein H chain (Photosynthetic reaction center H subunit); Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 5 : Inner membrane protein.
 
  
 0.967
BBta_2842
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
  
  
 0.966
bchE
Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit; Evidence: Function of homologous gene experimentally demonstrated in an other organism.
 
  
 0.965
bchD
Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
  
 0.959
BBta_6410
Hypothetical protein; Photosynthetic complex assembly pdomain; Evidence: Similar to previously reported genes of unknown function.
 
    0.958
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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