STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_6866Hypothetical protein; Belongs to the UPF0335 family (91 aa)    
Predicted Functional Partners:
BBta_6105
Uncharacterized protein; Evidence: Similar to previously reported genes of unknown function
  
   
 0.819
BBta_0947
Uncharacterized protein; Evidence: Similar to previously reported genes of unknown function
  
   
 0.805
BBta_0090
Dna helicase/exodeoxyribonuclease v, subunit a; Belongs to the helicase family. UvrD subfamily
  
     0.760
BBta_0222
Putative Glutathione S-transferase family protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology
  
     0.753
BBta_0089
DNA helicase/exodeoxyribonuclease V, subunit B; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic
  
     0.736
rpsU
Small subunit ribosomal protein s21; Belongs to the bacterial ribosomal protein bS21 family
  
     0.729
BBta_0072
Hypothetical protein; Uncharacterized protein; Evidence: Similar to previously reported genes of unknown function
  
     0.721
RpsU
Small subunit ribosomal protein s21; Belongs to the bacterial ribosomal protein bS21 family
  
     0.710
BBta_1744
Hypothetical protein; Uncharacterized protein; Evidence: Similar to previously reported genes of unknown function
  
     0.696
recO
Dna repair protein reco (recombination protein o); Involved in DNA repair and RecF pathway recombination
  
     0.689
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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