STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
czcDCation efflux system protein czcD; Evidence: Function of strongly homologous gene; Localization: 5 : Inner membrane protein; PUBMED: 8829543. (305 aa)    
Predicted Functional Partners:
BBta_7267
Evidence: Similar to previously reported genes of unknown function.
       0.518
actP
Copper-transporting P-type ATPase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 5 : Inner membrane protein.
 
  
 0.497
BBta_7266
Putative outer membrane cobalt-zinc-cadmium resistance protein czcC precursor; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 8 : Outer membrane-associated; PUBMED: 7766206.
     
 0.458
BBta_7265
Putative cobalt-zinc-cadmium resistance protein czcB (Cation efflux system protein czcB); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane; PUBMED: 2678100.
     
 0.453
BBta_7264
Nitrogen regulatory protein P-II precursor; Evidence: Function of strongly homologous gene; PUBMED: 8282715.
  
  
 0.446
czcA-2
RND divalent metal cation efflux transporter CzcA; Evidence: Function of strongly homologous gene; Localization: 11 : Membrane; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.402
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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