STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_7743Conjugal transfer protein TrbD; Evidence: Function of strongly homologous gene; Localization: 11 : Membrane; PUBMED: 8763954 (166 aa)    
Predicted Functional Partners:
BBta_7744
Conjugal transfer protein trbE; Evidence: Function of strongly homologous gene; PUBMED: 8763954
 
   
 0.967
BBta_7742
Conjugal transfer protein TrbC; Evidence: Function of strongly homologous gene; Localization: 3 : Fimbrial; PUBMED: 8763954
 
   
 0.966
BBta_7745
Putative conjugal transfer protein trbJ; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology
 
   
 0.966
BBta_7747
Putative conjugal transfer protein trbL; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane
 
   
 0.966
BBta_7748
Putative conjugal transfer protein trbF; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PUBMED: 8763954
 
   
 0.964
BBta_7741
Conjugal transfer protein trbB; Evidence: Function of strongly homologous gene; Localization: 3 : Fimbrial; PUBMED: 8763954
 
   
 0.929
BBta_7749
Putative conjugal transfer protein trbG; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 9 : Periplasmic; PUBMED: 8763954
 
   
 0.911
BBta_7750
Putative conjugal transfer protein trbI; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 3 : Fimbrial; PUBMED: 8763954, 9887305
 
   
 0.892
BBta_7740
Uncharacterized protein; Evidence: Similar to previously reported genes of unknown function
 
     0.890
BBta_7739
Putative plasmid transfer factor, traG protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 6 : Inner membrane-associated; PUBMED: 1665997
 
   
 0.887
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1, Bradyrhizobium sp. BTAi1
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