Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABY22001.1 | ABY22376.1 | RSal33209_0245 | RSal33209_0629 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Adenylosuccinate lyase. | 0.826 |
ABY22001.1 | ABY22405.1 | RSal33209_0245 | RSal33209_0658 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Aspartate aminotransferase. | 0.833 |
ABY22001.1 | ABY22886.1 | RSal33209_0245 | RSal33209_1148 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Aspartate/alanine aminotransferase. | 0.833 |
ABY22001.1 | ABY23128.1 | RSal33209_0245 | RSal33209_1391 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 2-oxoglutarate dehydrogenase E1 component. | 0.995 |
ABY22001.1 | ABY24059.1 | RSal33209_0245 | RSal33209_2329 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Glutamate synthase [NADPH] large chain; Partial, C-terminus. | 0.829 |
ABY22001.1 | ABY24119.1 | RSal33209_0245 | RSal33209_2393 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Aconitate hydratase. | 0.987 |
ABY22001.1 | fhs | RSal33209_0245 | RSal33209_1710 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. | 0.880 |
ABY22001.1 | folD | RSal33209_0245 | RSal33209_0272 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Tetrahydrofolate dehydrogenase/cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.884 |
ABY22001.1 | gcvP | RSal33209_0245 | RSal33209_1721 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.851 |
ABY22001.1 | sucC | RSal33209_0245 | RSal33209_0352 | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.851 |
ABY22376.1 | ABY22001.1 | RSal33209_0629 | RSal33209_0245 | Adenylosuccinate lyase. | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.826 |
ABY22376.1 | ABY23128.1 | RSal33209_0629 | RSal33209_1391 | Adenylosuccinate lyase. | 2-oxoglutarate dehydrogenase E1 component. | 0.879 |
ABY22376.1 | fhs | RSal33209_0629 | RSal33209_1710 | Adenylosuccinate lyase. | Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. | 0.582 |
ABY22376.1 | folD | RSal33209_0629 | RSal33209_0272 | Adenylosuccinate lyase. | Tetrahydrofolate dehydrogenase/cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.780 |
ABY22376.1 | gcvP | RSal33209_0629 | RSal33209_1721 | Adenylosuccinate lyase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.514 |
ABY22405.1 | ABY22001.1 | RSal33209_0658 | RSal33209_0245 | Aspartate aminotransferase. | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.833 |
ABY22405.1 | ABY22886.1 | RSal33209_0658 | RSal33209_1148 | Aspartate aminotransferase. | Aspartate/alanine aminotransferase. | 0.904 |
ABY22405.1 | ABY23128.1 | RSal33209_0658 | RSal33209_1391 | Aspartate aminotransferase. | 2-oxoglutarate dehydrogenase E1 component. | 0.845 |
ABY22405.1 | ABY24059.1 | RSal33209_0658 | RSal33209_2329 | Aspartate aminotransferase. | Glutamate synthase [NADPH] large chain; Partial, C-terminus. | 0.908 |
ABY22886.1 | ABY22001.1 | RSal33209_1148 | RSal33209_0245 | Aspartate/alanine aminotransferase. | Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.833 |
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