Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABY22696.1 | menD | RSal33209_0955 | RSal33209_2643 | Putative delta fatty acid desaturase. | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.613 |
ABY22696.1 | ubiE | RSal33209_0955 | RSal33209_2638 | Putative delta fatty acid desaturase. | Menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.591 |
ABY24037.1 | ABY24364.1 | RSal33209_2306 | RSal33209_2639 | Conserved hypothetical protein. | Isochorismate synthase. | 0.453 |
ABY24037.1 | menA | RSal33209_2306 | RSal33209_2702 | Conserved hypothetical protein. | 1,4-dihydroxy-2-naphthoate polyprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.509 |
ABY24037.1 | menB | RSal33209_2306 | RSal33209_2700 | Conserved hypothetical protein. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.458 |
ABY24037.1 | menD | RSal33209_2306 | RSal33209_2643 | Conserved hypothetical protein. | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.489 |
ABY24364.1 | ABY24037.1 | RSal33209_2639 | RSal33209_2306 | Isochorismate synthase. | Conserved hypothetical protein. | 0.453 |
ABY24364.1 | ABY24426.1 | RSal33209_2639 | RSal33209_2701 | Isochorismate synthase. | O-succinylbenzoic acid--CoA ligase. | 0.539 |
ABY24364.1 | menA | RSal33209_2639 | RSal33209_2702 | Isochorismate synthase. | 1,4-dihydroxy-2-naphthoate polyprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.711 |
ABY24364.1 | menB | RSal33209_2639 | RSal33209_2700 | Isochorismate synthase. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.923 |
ABY24364.1 | menC-2 | RSal33209_2639 | RSal33209_2644 | Isochorismate synthase. | O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.659 |
ABY24364.1 | menD | RSal33209_2639 | RSal33209_2643 | Isochorismate synthase. | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.993 |
ABY24364.1 | ubiE | RSal33209_2639 | RSal33209_2638 | Isochorismate synthase. | Menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.804 |
ABY24370.1 | ABY24426.1 | RSal33209_2645 | RSal33209_2701 | PAP2 superfamily protein. | O-succinylbenzoic acid--CoA ligase. | 0.504 |
ABY24370.1 | menC-2 | RSal33209_2645 | RSal33209_2644 | PAP2 superfamily protein. | O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.600 |
ABY24370.1 | menD | RSal33209_2645 | RSal33209_2643 | PAP2 superfamily protein. | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.565 |
ABY24426.1 | ABY24364.1 | RSal33209_2701 | RSal33209_2639 | O-succinylbenzoic acid--CoA ligase. | Isochorismate synthase. | 0.539 |
ABY24426.1 | ABY24370.1 | RSal33209_2701 | RSal33209_2645 | O-succinylbenzoic acid--CoA ligase. | PAP2 superfamily protein. | 0.504 |
ABY24426.1 | menA | RSal33209_2701 | RSal33209_2702 | O-succinylbenzoic acid--CoA ligase. | 1,4-dihydroxy-2-naphthoate polyprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.874 |
ABY24426.1 | menB | RSal33209_2701 | RSal33209_2700 | O-succinylbenzoic acid--CoA ligase. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.994 |
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