STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ03054.1Uncharacterized conserved protein. (142 aa)    
Predicted Functional Partners:
SFQ03086.1
Cytochrome C oxidase, cbb3-type, subunit III.
 
     0.851
SFQ03110.1
Copper resistance protein B.
 
   
 0.821
SFQ03161.1
Copper-resistance protein, CopA family.
 
     0.810
SFQ03136.1
Hypothetical protein.
       0.752
SFQ03286.1
Hypothetical protein.
  
     0.511
SFQ03566.1
Cu+-exporting ATPase.
 
   
 0.500
SFQ03303.1
HupE / UreJ protein.
  
     0.438
SFP77636.1
Cu+-exporting ATPase.
 
   
 0.416
SFP26843.1
Cu and Ag efflux protein CusF.
 
   
 0.415
SFQ03011.1
TIR domain-containing protein.
       0.415
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.