STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI20454.1CDP-abequose synthase; Identified by match to protein family HMM PF01370. (310 aa)    
Predicted Functional Partners:
rfbF
Glucose-1-phosphate cytidylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623.
 
 
 0.909
ACI21590.1
Transketolase subunit A; Identified by match to protein family HMM PF00456.
      0.841
ACI21815.1
CDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
    
0.836
ACI20816.1
Methyltransferase, putative; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08484.
 
    0.813
ACI21962.1
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
   0.788
ACI21200.1
Lipopolysaccharide biosynthesis protein RfbH.
  
 0.728
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.727
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.727
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.712
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.712
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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