STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI20319.1Sensory transduction protein LytT; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (257 aa)    
Predicted Functional Partners:
ACI20975.1
Sensor protein LytS; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694.
 
 0.972
ACI22159.1
Sensor protein LytS; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694.
 
 0.884
ACI22100.1
ABC-2 type transporter superfamily; Identified by match to protein family HMM PF01061.
  
    0.643
ACI21524.1
ABC-type multidrug transport system, ATPase component; Identified by match to protein family HMM PF00005.
  
    0.643
ACI20360.1
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR02504.
       0.639
ACI21305.1
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08269.
     
 0.490
ACI21293.1
Putative zinc-binding protein; Identified by match to protein family HMM PF03884.
       0.469
dapB2
Dihydrodipicolinate reductase; Identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036.
       0.469
ACI21253.1
Putative Carbon starvation protein A; Identified by match to protein family HMM PF02554.
       0.408
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.