R1FF22_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1FF22_EMIHU

Ubiquitin-like domain-containing protein. (115 aa)

Predicted Functional Partners:

R1CME4_EMIHU

0.999

R1EGX6_EMIHU

0.997

R1BCK1_EMIHU

0.996

R1C9S8_EMIHU

0.996

R1CH68_EMIHU

0.996

R1CXH0_EMIHU

0.996

R1D9R0_EMIHU

0.996

R1DUW7_EMIHU

0.996

R1DZL0_EMIHU

0.996

R1E604_EMIHU

0.996

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1BCK1_EMIHU	R1C9S8_EMIHU	R1BCK1	R1C9S8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
R1BCK1_EMIHU	R1CH68_EMIHU	R1BCK1	R1CH68	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
R1BCK1_EMIHU	R1CME4_EMIHU	R1BCK1	R1CME4	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
R1BCK1_EMIHU	R1CXH0_EMIHU	R1BCK1	R1CXH0	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
R1BCK1_EMIHU	R1D9R0_EMIHU	R1BCK1	R1D9R0	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
R1BCK1_EMIHU	R1DUW7_EMIHU	R1BCK1	R1DUW7	Uncharacterized protein.	Uncharacterized protein.	0.999
R1BCK1_EMIHU	R1DZL0_EMIHU	R1BCK1	R1DZL0	Uncharacterized protein.	Uncharacterized protein.	0.999
R1BCK1_EMIHU	R1E604_EMIHU	R1BCK1	R1E604	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
R1BCK1_EMIHU	R1EGX6_EMIHU	R1BCK1	R1EGX6	Uncharacterized protein.	Uncharacterized protein.	0.999
R1BCK1_EMIHU	R1FF22_EMIHU	R1BCK1	R1FF22	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.996
R1C9S8_EMIHU	R1BCK1_EMIHU	R1C9S8	R1BCK1	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
R1C9S8_EMIHU	R1CH68_EMIHU	R1C9S8	R1CH68	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
R1C9S8_EMIHU	R1CME4_EMIHU	R1C9S8	R1CME4	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
R1C9S8_EMIHU	R1CXH0_EMIHU	R1C9S8	R1CXH0	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
R1C9S8_EMIHU	R1D9R0_EMIHU	R1C9S8	R1D9R0	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
R1C9S8_EMIHU	R1DUW7_EMIHU	R1C9S8	R1DUW7	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
R1C9S8_EMIHU	R1DZL0_EMIHU	R1C9S8	R1DZL0	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
R1C9S8_EMIHU	R1E604_EMIHU	R1C9S8	R1E604	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
R1C9S8_EMIHU	R1EGX6_EMIHU	R1C9S8	R1EGX6	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
R1C9S8_EMIHU	R1FF22_EMIHU	R1C9S8	R1FF22	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Ubiquitin-like domain-containing protein.	0.996