STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_0464Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family. (436 aa)    
Predicted Functional Partners:
Cvib_0679
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tvo:TVN0942 phosphoglycolate phosphatase.
     
 0.905
Cvib_1004
KEGG: plt:Plut_1252 HAD-superfamily hydrolase subfamily IA; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
     
 0.905
Cvib_1463
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: plt:Plut_1678 hydrolase, haloacid dehalogenase-like family.
     
 0.905
Cvib_0465
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: plt:Plut_0413 oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.776
Cvib_0466
KEGG: plt:Plut_0414 hypothetical protein.
       0.776
Cvib_0467
KEGG: plt:Plut_0415 hypothetical protein.
       0.773
Cvib_1297
PFAM: major facilitator superfamily MFS_1; KEGG: plt:Plut_1481 transporter, putative.
  
     0.742
Cvib_0355
KEGG: plt:Plut_0290 acetyltransferase, CysE/LacA/LpxA/NodL family.
    
 
 0.710
Cvib_1446
KEGG: plt:Plut_1657 hypothetical protein.
  
    0.672
Cvib_0463
PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: plt:Plut_0411 hypothetical protein.
     
 0.596
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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