STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_0507KEGG: plt:Plut_0459 isocitrate dehydrogenase NADP-dependent, monomeric type; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; Belongs to the monomeric-type IDH family. (741 aa)    
Predicted Functional Partners:
Cvib_1597
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1954 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit.
  
 
 0.972
Cvib_0598
Aconitase; PFAM: aconitate hydratase domain protein; aconitate hydratase 2; KEGG: plt:Plut_0556 aconitate hydratase; Belongs to the aconitase/IPM isomerase family.
  
 
 0.938
Cvib_1598
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: plt:Plut_1955 ferrodoxin oxidoreductase beta subunit.
  
 
 0.928
Cvib_0558
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: plt:Plut_0502 glutamate synthase (ferredoxin).
     
 0.894
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.885
Cvib_1407
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1617 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.870
Cvib_0800
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: plt:Plut_1152 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
  0.835
Cvib_0412
PFAM: aldehyde dehydrogenase; KEGG: plt:Plut_0352 aldehyde dehydrogenase family protein.
   
 
  0.805
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: plt:Plut_1043 argininosuccinate lyase.
     
 0.805
Cvib_0559
TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: plt:Plut_0503 glutamate synthase, NADH/NADPH, small subunit 1.
   
 
  0.802
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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