STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_0546PFAM: NUDIX hydrolase; KEGG: plt:Plut_0490 NUDIX/MutT family protein; Belongs to the Nudix hydrolase family. (168 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: plt:Plut_0283 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
    0.611
Cvib_1107
PFAM: protein of unknown function DUF814; KEGG: plt:Plut_0725 fibronectin-binding protein, putative.
  
     0.484
Cvib_0545
KEGG: plt:Plut_0489 hypothetical protein.
       0.478
Cvib_1768
PFAM: protein of unknown function DUF1232; KEGG: plt:Plut_2125 hypothetical protein.
  
     0.414
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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