STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_1109PFAM: permease YjgP/YjgQ family protein; KEGG: plt:Plut_0723 hypothetical protein. (441 aa)    
Predicted Functional Partners:
Cvib_0353
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0288 ATPase.
 
 
 0.976
Cvib_0444
PFAM: permease YjgP/YjgQ family protein; KEGG: plt:Plut_0389 hypothetical protein.
 
  
 
0.912
Cvib_1550
PFAM: protein of unknown function DUF1239; KEGG: plt:Plut_1768 hypothetical protein.
 
 
 0.870
Cvib_0289
KEGG: plt:Plut_0223 hypothetical protein.
  
     0.747
Cvib_1532
PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein, ShlB-type; KEGG: plt:Plut_1751 surface antigen family protein.
 
     0.703
Cvib_0580
KEGG: plt:Plut_0536 hypothetical protein.
 
  
 0.670
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
    0.665
Cvib_0285
KEGG: plt:Plut_0219 hypothetical protein.
  
     0.648
Cvib_1549
PFAM: outer membrane chaperone Skp (OmpH); KEGG: plt:Plut_1767 outer membrane protein OmpH.
  
     0.568
Cvib_0239
KEGG: plt:Plut_0173 hypothetical protein.
  
     0.532
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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