STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJHypothetical protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (243 aa)    
Predicted Functional Partners:
CKO_00248
Hypothetical protein; KEGG: stm:STM2546 4.2e-133 suhB; putative myo-inositol-1(or 4)-monophosphatase K01092; COG: COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; Psort location: Cytoplasmic, score:8.96.
 
     0.632
CKO_03536
Hypothetical protein; COG: COG0795 Predicted permeases; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.622
rlmE
Hypothetical protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
   
 0.567
rnhB
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
 
  
 0.532
iscR
Hypothetical protein; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins.
       0.496
trmB
Hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
  
  
 0.476
CKO_01797
Hypothetical protein; KEGG: eco:b1768 5.6e-99 pncA, ydjB, nam; pyrazinamidase / nicotinamidase K01440:K08281; COG: COG1335 Amidases related to nicotinamidase.
 
      0.424
CKO_03538
Hypothetical protein; COG: COG0795 Predicted permeases; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.408
CKO_04819
Hypothetical protein; KEGG: stm:STM3493 0. mrcA; transpeptidase of penicillin-binding protein 1a (peptidoglycan synthetase) K05366; COG: COG5009 Membrane carboxypeptidase/penicillin-binding protein.
 
     0.405
dusA
Hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
  
   
 0.404
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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