STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_0636BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012; match to protein family HMM TIGR01451. (1004 aa)    
Predicted Functional Partners:
AAur_3540
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
  
  
 
0.925
AAur_1732
Identified by match to protein family HMM PF00884.
  
 
 0.921
rafA
Alpha-galactosidase (melibiase); Identified by match to protein family HMM PF02065.
    
  0.900
AAur_2951
Putative integral membrane protein.
 
  
 0.723
AAur_3997
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.711
AAur_3791
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.678
AAur_0162
Putative hydrolase.
  
     0.677
AAur_1212
Putative ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
  
 0.662
AAur_0825
Putative dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
 
   
 0.659
AAur_3476
Putative Thymidylate kinase.
 
     0.652
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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