STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_1139beta-D-xylosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915. (785 aa)    
Predicted Functional Partners:
AAur_1138
Identified by match to protein family HMM PF00583.
       0.613
AAur_0242
Xylosidase/arabinosidase; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.519
AAur_1140
Oxidoreductase family, NAD-binding Rossmann fold domain protein; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447.
       0.494
AAur_1143
Putative transcription regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
 
     0.442
AAur_1141
Conserved hypothetical protein.
       0.441
abfA-2
alpha-L-arabinofuranosidase; Identified by match to protein family HMM PF06964.
 
   
 0.436
abfA
alpha-L-arabinofuranosidase; Identified by match to protein family HMM PF06964.
 
   
 0.423
AAur_4074
Putative protein of unknown function (DUF1343); Identified by match to protein family HMM PF07075; match to protein family HMM TIGR01409.
 
  
 0.417
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
Server load: medium (68%) [HD]