STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_1866Putative alcohol dehydrogenase; Identified by match to protein family HMM PF00107. (382 aa)    
Predicted Functional Partners:
AAur_1865
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.936
adhT
Alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
 
0.923
adhA
Zn-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
 
0.920
AAur_1380
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
  0.909
AAur_3064
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
  0.909
fdhA-2
Glutathione-independent formaldehyde dehydrogenase; Identified by match to protein family HMM PF00107.
 
    
0.669
AAur_2021
Putative general stress protein; Identified by match to protein family HMM PF01243.
 
     0.435
AAur_0634
Catalase, Mn-containing; Identified by match to protein family HMM PF05067.
 
    0.434
AAur_2323
Putative iron-sulfur cluster-binding protein, rieske family; Identified by match to protein family HMM PF00355; match to protein family HMM PF00890; match to protein family HMM PF01266.
 
  
 0.406
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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