STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_1905Ribulose bisphosphate carboxylase, large subunit,-like protein; Identified by similarity to GB:AAK14332.1; match to protein family HMM PF00016; Belongs to the RuBisCO large chain family. (431 aa)    
Predicted Functional Partners:
AAur_1904
Putative ygbK domain protein; Identified by match to protein family HMM PF07005.
 
   
 0.958
AAur_0886
Putative phosphatase; Identified by match to protein family HMM PF00702.
    
 0.909
AAur_2081
Putative phosphatase, HAD family; Identified by match to protein family HMM PF00702.
    
 0.909
kdgT
2-keto-3-deoxygluconate permease; Identified by match to protein family HMM PF03812.
       0.790
AAur_1628
Putative non-ribosomal peptide synthetase; Identified by match to protein family HMM PF00132; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353.
   
 
 0.690
tdh-2
L-threonine 3-dehydrogenase; Identified by match to protein family HMM PF00107.
     
 0.660
AAur_1224
Putative bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132.
    
 
 0.632
araD
L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596.
  
  
 0.604
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.
    
 0.585
AAur_1907
Transcription regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
       0.554
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.