STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_2838Putative ABC1 family domain protein; Identified by match to protein family HMM PF03109. (567 aa)    
Predicted Functional Partners:
AAur_2839
Putative transcriptional regulator, PadR family domain protein; Identified by match to protein family HMM PF03551.
 
     0.915
AAur_2837
Putative universal stress family domain protein; Identified by match to protein family HMM PF00582.
     
 0.717
crcB
Putative crcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.714
crcB-2
Putative crcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.714
AAur_2834
Putative ferritin family protein; Iron-storage protein.
  
    0.559
AAur_2840
Putative transcriptional regulator, PadR family; Identified by match to protein family HMM PF03551.
       0.531
AAur_2841
Hypothetical protein; Identified by Glimmer2; putative.
       0.514
AAur_3233
Putative signal transduction histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
   
 
 0.481
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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