STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_3369Identified by match to protein family HMM PF00905; match to protein family HMM PF00912. (762 aa)    
Predicted Functional Partners:
AAur_0030
Penicillin binding protein transpeptidase domain; Identified by match to protein family HMM PF00905.
 
 
 
 0.842
AAur_1704
Penicillin binding protein transpeptidase domain; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
 
 
 
 0.839
AAur_3370
Identified by match to protein family HMM PF00149.
       0.801
AAur_3184
Penicillin binding protein transpeptidase domain; Identified by match to protein family HMM PF00905.
 
 
 
 0.750
mltG
Putative Uncharacterized BCR YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.734
AAur_1718
Putative cell division protein, DivIVA family; Identified by match to protein family HMM PF05103.
 
 
 
 0.730
AAur_4181
Penicillin binding protein transpeptidase domain; Identified by match to protein family HMM PF00905; match to protein family HMM PF05223.
 
 
 
 0.728
ftsW
Cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family.
 
 
 
 0.722
AAur_1018
M23 peptidase domain protein; Identified by match to protein family HMM PF01551.
  
   
 0.655
AAur_2783
Conserved hypothetical protein.
   
 
 0.631
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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