STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_3475Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (272 aa)    
Predicted Functional Partners:
AAur_3258
Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
 
 0.874
AAur_3474
Putative acyl-CoA transferase, CAIB/BAIF family; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
  
 0.791
AAur_1104
Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737; match to protein family HMM PF03721.
 
 0.786
AAur_1278
Putative beta-ketoadipyl CoA thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.745
AAur_2112
Putative beta-ketoadipyl-CoA thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.742
pcaF
beta-ketoadipyl-CoA thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.740
AAur_1796
Putative acetyl-coa acetyltransferase (thiolase); Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.738
AAur_1530
Putative Acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
 0.726
AAur_0470
Putative 3-ketoacyl-CoA thiolase; Identified by match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.704
AAur_2140
Putative acetyl-coa acetyltransferase (thiolase); Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.704
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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