STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_3540BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012. (552 aa)    
Predicted Functional Partners:
AAur_1732
Identified by match to protein family HMM PF00884.
  
 
 0.934
AAur_0636
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012; match to protein family HMM TIGR01451.
  
  
 
0.925
rafA
Alpha-galactosidase (melibiase); Identified by match to protein family HMM PF02065.
     
  0.900
AAur_0825
Putative dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
 
   
 0.692
AAur_0829
Putative bacterial extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.
 
   
 0.640
AAur_0827
Putative ABC-type dipeptide/oligopeptide transport system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; Belongs to the binding-protein-dependent transport system permease family.
 
     0.622
AAur_0162
Putative hydrolase.
  
     0.579
AAur_3791
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.574
AAur_3538
Conserved hypothetical protein.
       0.553
AAur_1127
Putative beta-galactosidase; Identified by match to protein family HMM PF02449.
  
 0.532
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
Server load: medium (80%) [HD]