STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBTrna (guanine-n(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (301 aa)    
Predicted Functional Partners:
AAur_1823
Ribosomal rna small subunit methyltransferase b; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family
  
 
 0.887
AAur_2173
Trna (adenine57-n1/adenine58-n1)-methyltransferase catalytic subunit; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
  
 
 0.824
truB
Trna pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs
  
 
 0.818
AAur_3559
Uncharacterized protein; Identified by Glimmer2; putative
  
    0.801
AAur_3558
Uncharacterized protein; Identified by Glimmer2; putative
       0.778
truA
Trna pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
 
 
 0.769
prmC
Putative modification methylase, hemk family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif
 
 
 0.734
ksgA
16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
  
  
 0.721
gidB
16S rRNA (guanine527-N7)-methyltransferase; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA
 
  
 0.649
AAur_3556
Uncharacterized protein; Identified by Glimmer2; putative
       0.612
Your Current Organism:
Arthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: A. aurescens TC1, Arthrobacter aurescens TC1, Arthrobacter aurescens str. TC1, Arthrobacter aurescens strain TC1
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