STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csal_0366Mandelate racemase/muconate lactonizing enzyme. (440 aa)    
Predicted Functional Partners:
Csal_0368
Amidohydrolase 2.
 
     0.930
Csal_1738
Short-chain dehydrogenase/reductase SDR.
  
  
  0.915
Csal_0369
Aldo/keto reductase.
 
    0.911
Csal_1748
Mandelate racemase/muconate lactonizing enzyme.
  
  
 
0.904
Csal_0367
RbsD or FucU transport.
 
     0.883
Csal_0365
Transcriptional regulator, GntR family.
 
     0.600
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.