Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Csal_0869 | Csal_1635 | Csal_0869 | Csal_1635 | Multi-sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.946 |
Csal_0869 | Csal_2260 | Csal_0869 | Csal_2260 | Multi-sensor hybrid histidine kinase. | OmpA/MotB. | 0.433 |
Csal_0869 | Csal_2280 | Csal_0869 | Csal_2280 | Multi-sensor hybrid histidine kinase. | Serine/threonine protein kinase. | 0.673 |
Csal_0869 | Csal_2869 | Csal_0869 | Csal_2869 | Multi-sensor hybrid histidine kinase. | 16S rRNA m(5)C-967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.425 |
Csal_0869 | kdkA | Csal_0869 | Csal_0015 | Multi-sensor hybrid histidine kinase. | Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.548 |
Csal_1000 | Csal_2280 | Csal_1000 | Csal_2280 | Sarcosine oxidase, alpha subunit family; Belongs to the GcvT family. | Serine/threonine protein kinase. | 0.729 |
Csal_1635 | Csal_0869 | Csal_1635 | Csal_0869 | Multi-sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.946 |
Csal_1635 | Csal_2260 | Csal_1635 | Csal_2260 | Multi-sensor hybrid histidine kinase. | OmpA/MotB. | 0.471 |
Csal_1635 | Csal_2280 | Csal_1635 | Csal_2280 | Multi-sensor hybrid histidine kinase. | Serine/threonine protein kinase. | 0.690 |
Csal_1635 | Csal_2869 | Csal_1635 | Csal_2869 | Multi-sensor hybrid histidine kinase. | 16S rRNA m(5)C-967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.463 |
Csal_2260 | Csal_0869 | Csal_2260 | Csal_0869 | OmpA/MotB. | Multi-sensor hybrid histidine kinase. | 0.433 |
Csal_2260 | Csal_1635 | Csal_2260 | Csal_1635 | OmpA/MotB. | Multi-sensor hybrid histidine kinase. | 0.471 |
Csal_2260 | Csal_2261 | Csal_2260 | Csal_2261 | OmpA/MotB. | Conserved hypothetical protein. | 0.969 |
Csal_2260 | Csal_2280 | Csal_2260 | Csal_2280 | OmpA/MotB. | Serine/threonine protein kinase. | 0.652 |
Csal_2261 | Csal_2260 | Csal_2261 | Csal_2260 | Conserved hypothetical protein. | OmpA/MotB. | 0.969 |
Csal_2261 | Csal_2280 | Csal_2261 | Csal_2280 | Conserved hypothetical protein. | Serine/threonine protein kinase. | 0.711 |
Csal_2280 | Csal_0869 | Csal_2280 | Csal_0869 | Serine/threonine protein kinase. | Multi-sensor hybrid histidine kinase. | 0.673 |
Csal_2280 | Csal_1000 | Csal_2280 | Csal_1000 | Serine/threonine protein kinase. | Sarcosine oxidase, alpha subunit family; Belongs to the GcvT family. | 0.729 |
Csal_2280 | Csal_1635 | Csal_2280 | Csal_1635 | Serine/threonine protein kinase. | Multi-sensor hybrid histidine kinase. | 0.690 |
Csal_2280 | Csal_2260 | Csal_2280 | Csal_2260 | Serine/threonine protein kinase. | OmpA/MotB. | 0.652 |
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