STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csal_2339Proline racemase; In vitro, catalyzes the epimerization of trans-4-hydroxy-L- proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp), albeit with very low efficiency. The physiological substrate may be different. Displays neither proline racemase activity nor t3LHyp dehydratase activity. (361 aa)    
Predicted Functional Partners:
Csal_2340
Alcohol dehydrogenase, zinc-binding protein.
 
     0.936
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
      
 0.741
Csal_1752
Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.725
Csal_1140
Aldehyde dehydrogenase.
 
 
   0.529
Csal_2708
D-amino-acid dehydrogenase.
 
   
 0.492
Csal_2705
Proline racemase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Displays no proline racemase activity.
  
   
0.489
Csal_2706
Dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.487
Csal_1724
FAD dependent oxidoreductase.
 
   
 0.484
Csal_0168
TspO and MBR like protein.
   
    0.422
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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