STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csal_3215Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family. (429 aa)    
Predicted Functional Partners:
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.922
Csal_0288
HAD-superfamily hydrolase, subfamily IA, variant 1.
     
 0.905
Csal_1594
HAD-superfamily hydrolase, subfamily IA, variant 1.
     
 0.905
Csal_3217
Type III effector Hrp-dependent outer protein.
 
   
 0.904
Csal_0910
Phosphoribulokinase.
 
 
 0.830
Csal_3214
TRAP dicarboxylate transporter- DctP subunit.
 
     0.680
Csal_0401
Anhydrase, family 3 protein.
    
 
 0.635
Csal_3189
Transferase hexapeptide repeat protein.
    
 
 0.635
Csal_3180
Class II aldolase/adducin-like protein.
 
  
 0.597
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.578
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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