STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_0037PFAM: dihydrodipicolinate synthetase; KEGG: cgb:cg0536 putative 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. (304 aa)    
Predicted Functional Partners:
Arth_0036
PFAM: aldehyde dehydrogenase; KEGG: cgb:cg0535 probable ketoglutarate semialdehyde dehydrogenase.
 
 
 0.986
Arth_0479
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: ani:AN0613.2 hypothetical protein.
 
  
 0.968
Arth_0035
KEGG: bja:blr5872 glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.960
Arth_0032
Galactarate dehydratase / L-talarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: reu:Reut_B4643 mandelate racemase/muconate lactonizing enzyme.
 
  
 0.954
Arth_3337
PFAM: dihydrodipicolinate synthetase; KEGG: tfu:Tfu_1718 putative dihydrodipicolinate synthase; Belongs to the DapA family.
  
  
 
0.916
Arth_0038
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cgb:cg0537 putative transcriptional regulator LysR-type.
 
  
 0.788
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.648
Arth_0483
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: tfu:Tfu_1140 hypothetical protein.
 
  
 0.620
Arth_0034
PFAM: Auxin Efflux Carrier; KEGG: blo:BL1279 hypothetical protein with unknown or transport function.
 
     0.547
Arth_0552
TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: sco:SCO3615 putative aspartokinase; Belongs to the aspartokinase family.
 
  
 0.543
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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