STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_1698Hyaluronate lyase; KEGG: sma:SAV2704 polysaccharide lyase (hyaluronidase); TIGRFAM: Twin-arginine translocation pathway signal; PFAM: polysaccharide lyase family 8; polysaccharide lyase 8, N terminal alpha-helical. (793 aa)    
Predicted Functional Partners:
Arth_1697
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sco:SCO2754 hypothetical protein.
 
    0.631
Arth_3060
KEGG: nfa:nfa5720 hypothetical protein.
  
   
 0.539
Arth_1696
PFAM: protein of unknown function DUF202; KEGG: cgb:cg0135 putative inner membrane protein.
       0.522
Arth_3356
PFAM: regulatory protein, ArsR; KEGG: sma:SAV6161 ArsR-family transcriptional regulator.
  
     0.502
Arth_3657
Hypothetical protein; KEGG: cps:CPS_0753 alkaline serine protease, subtilase family.
  
     0.502
Arth_1699
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO0659 DeoR-family transcriptional regulator.
  
     0.500
Arth_0525
PFAM: protein of unknown function DUF214; KEGG: fra:Francci3_0813 protein of unknown function DUF214.
  
     0.492
Arth_1703
KEGG: sco:SCO0664 hypothetical protein.
 
     0.487
Arth_3057
KEGG: cjk:jk1505 hypothetical protein.
  
   
 0.481
Arth_1705
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: dge:Dgeo_2696 extracellular solute-binding protein, family 1; TC 3.A.1.1.-.
 
     0.473
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.