STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmJ2KEGG: sco:SCO0569 putative 50S ribosomal protein L36 (fragment); Belongs to the bacterial ribosomal protein bL36 family. (40 aa)    
Predicted Functional Partners:
rpmG
PFAM: ribosomal protein L33; KEGG: lxx:Lxx24990 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.961
rpmB
PFAM: ribosomal protein L28; KEGG: lxx:Lxx25000 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.953
rpmE2
PFAM: ribosomal protein L31; KEGG: lxx:Lxx11800 50S ribosomal protein L31.
 
 
 0.948
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: lxx:Lxx09790 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.926
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 0.916
rpmD
PFAM: ribosomal protein L30; KEGG: cjk:jk1793 ribosomal protein L30/L7E.
  
 
 0.912
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.912
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.911
rplQ
PFAM: ribosomal protein L17; KEGG: lxx:Lxx20070 50S ribosomal protein L17.
  
 
 0.911
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.911
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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