STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panDL-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (142 aa)    
Predicted Functional Partners:
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
 0.999
panB
Ketopantoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
 0.977
Arth_3118
PFAM: aminotransferase class-III; KEGG: sma:SAV4551 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.919
Arth_1757
PFAM: aminotransferase class-III; KEGG: sma:SAV7160 putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.910
Arth_3094
TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: sma:SAV2583 putative 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.910
Arth_1894
PFAM: aldehyde dehydrogenase; KEGG: csa:Csal_0348 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.907
Arth_2001
PFAM: aldehyde dehydrogenase; KEGG: cef:CE0555 putative aldehyde dehydrogenase.
    
 0.907
Arth_2364
PFAM: aldehyde dehydrogenase; KEGG: sma:SAV1187 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.907
Arth_3592
PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_C6374 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.907
Arth_2559
KEGG: blo:BL1375 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
    
 0.873
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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