STRINGSTRING
rsmG protein (Arthrobacter sp. FB24) - STRING interaction network
"rsmG" - Ribosomal RNA small subunit methyltransferase G in Arthrobacter sp. FB24
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmGRibosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA (228 aa)    
Predicted Functional Partners:
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (136 aa)
   
   
  0.942
Arth_4168
PFAM- single-stranded nucleic acid binding R3H domain protein; KEGG- pac-PPA2349 JAG-like protein (188 aa)
   
   
  0.912
Arth_4169
PFAM- 60 kDa inner membrane insertion protein; KEGG- lxx-Lxx25270 preprotein translocase, YidC subunit (324 aa)
   
   
  0.902
Arth_4170
Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane (131 aa)
   
   
  0.887
rpmH
PFAM- ribosomal protein L34; KEGG- sma-SAV4315 putative ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (45 aa)
   
   
  0.867
gltX
Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction- glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily (504 aa)
   
   
  0.853
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy (124 aa)
     
   
  0.844
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (401 aa)
 
 
  0.730
Arth_4166
Chromosome segregation ATPase; PFAM- Cobyrinic acid a,c-diamide synthase; KEGG- sma-SAV4309 putative partitioning or sporulation protein (333 aa)
   
   
  0.703
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (295 aa)
 
   
  0.690
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24, Arthrobacter sp. FB24
Server load: low (6%) [HD]