STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jann_2108Xylose isomerase-like protein; Belongs to the xylose isomerase family. (323 aa)    
Predicted Functional Partners:
Jann_2114
Carbohydrate kinase FGGY; Belongs to the FGGY kinase family.
 
  
 0.929
Jann_2407
Carbohydrate kinase FGGY; Belongs to the FGGY kinase family.
    
 0.907
xylB-2
Xylulokinase.
    
 0.907
Jann_2374
Short-chain dehydrogenase/reductase SDR.
     
  0.900
Jann_2674
PfkB.
    
  0.900
Jann_2907
Mannitol dehydrogenase-like protein.
     
  0.900
Jann_3303
Protein of unknown function DUF1498.
     
  0.900
Jann_2109
PfkB; Belongs to the carbohydrate kinase PfkB family.
 
     0.833
Jann_2107
Transcriptional regulator, GntR family.
 
     0.819
Jann_1943
Glucokinase; Belongs to the bacterial glucokinase family.
     
  0.800
Your Current Organism:
Jannaschia sp. CCS1
NCBI taxonomy Id: 290400
Other names: J. sp. CCS1
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