STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jann_2411Protein of unknown function DUF1470. (187 aa)    
Predicted Functional Partners:
Jann_2410
Protein of unknown function DUF6 transmembrane.
     
 0.836
Jann_2412
Transcriptional regulator, ArsR family.
  
  
 0.810
tetR
Transcriptional regulator, TetR family.
   
  
 0.639
Jann_1951
PfkB.
  
     0.542
Jann_2459
NAD-dependent epimerase/dehydratase.
  
     0.514
Jann_1764
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.499
Jann_2413
Hypothetical protein.
       0.495
Jann_2304
Helix-turn-helix type 11.
  
     0.445
Jann_2270
Hypothetical protein.
  
     0.406
Your Current Organism:
Jannaschia sp. CCS1
NCBI taxonomy Id: 290400
Other names: J. sp. CCS1
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