Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GOX1558 | GOX1560 | GOX1558 | GOX1560 | Hypothetical protein. | Hypothetical protein. | 0.773 |
GOX1558 | GOX1561 | GOX1558 | GOX1561 | Hypothetical protein. | Hypothetical protein. | 0.773 |
GOX1558 | GOX1562 | GOX1558 | GOX1562 | Hypothetical protein. | Bacteriophage-type DNA polymerase. | 0.557 |
GOX1558 | ispE | GOX1558 | GOX1559 | Hypothetical protein. | 4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.773 |
GOX1560 | GOX1558 | GOX1560 | GOX1558 | Hypothetical protein. | Hypothetical protein. | 0.773 |
GOX1560 | GOX1561 | GOX1560 | GOX1561 | Hypothetical protein. | Hypothetical protein. | 0.926 |
GOX1560 | GOX1562 | GOX1560 | GOX1562 | Hypothetical protein. | Bacteriophage-type DNA polymerase. | 0.578 |
GOX1560 | ispE | GOX1560 | GOX1559 | Hypothetical protein. | 4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.784 |
GOX1561 | GOX1558 | GOX1561 | GOX1558 | Hypothetical protein. | Hypothetical protein. | 0.773 |
GOX1561 | GOX1560 | GOX1561 | GOX1560 | Hypothetical protein. | Hypothetical protein. | 0.926 |
GOX1561 | GOX1562 | GOX1561 | GOX1562 | Hypothetical protein. | Bacteriophage-type DNA polymerase. | 0.578 |
GOX1561 | ispE | GOX1561 | GOX1559 | Hypothetical protein. | 4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.784 |
GOX1562 | GOX1558 | GOX1562 | GOX1558 | Bacteriophage-type DNA polymerase. | Hypothetical protein. | 0.557 |
GOX1562 | GOX1560 | GOX1562 | GOX1560 | Bacteriophage-type DNA polymerase. | Hypothetical protein. | 0.578 |
GOX1562 | GOX1561 | GOX1562 | GOX1561 | Bacteriophage-type DNA polymerase. | Hypothetical protein. | 0.578 |
GOX1562 | ispE | GOX1562 | GOX1559 | Bacteriophage-type DNA polymerase. | 4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.645 |
dxr | dxs | GOX1816 | GOX0252 | 1-Deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 1-Deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.994 |
dxr | ispDF | GOX1816 | GOX1669 | 1-Deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | IspD; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF); In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily. | 0.995 |
dxr | ispE | GOX1816 | GOX1559 | 1-Deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.943 |
dxr | ispG | GOX1816 | GOX0034 | 1-Deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 1-Hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.947 |
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