STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAU_00280Putative membrane Protein. (256 aa)    
Predicted Functional Partners:
PAU_00282
Putative membrane protein.
 
  
 0.963
PAU_00283
Conserved hypothetical protein.
 
  
 0.963
PAU_00281
Conserved hypothetical protein.
 
  
 0.958
PAU_00284
Conserved hypothetical protein.
 
  
 0.956
PAU_00287
Conserved hypothetical protein.
 
  
 0.949
PAU_00288
Conserved hypothetical protein.
 
  
 0.943
PAU_00285
Conserved hypothetical protein.
 
  
 0.938
PAU_00286
Conserved hypothetical protein.
 
  
 0.935
PAU_03787
Outer membrane protein, ompa/motb family; Most of the bacterial outer membrane proteins in this group are porin-like integral membrane proteins.
  
  
 
0.920
pmt1
Conserved hypothetical protein; This entry represents a conserved region within several bacterial proteins that resemble ImcF, which has been proposed to be involved in cell surface reorganisation, resulting in increased adherence to epithelial cells and increased conjugation frequency.
 
 
 0.905
Your Current Organism:
Photorhabdus asymbiotica
NCBI taxonomy Id: 291112
Other names: ATCC 43950, CIP 106331, DSM 15149, P. asymbiotica, strain 3265-86
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.