STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtxDRTX toxin ABC transporter protein. (451 aa)    
Predicted Functional Partners:
rtxB
RTX toxin ABC transporter protein.
 
 0.985
PAU_03079
Toxin secretion abc transporter protein, hlyb family; similar to unknown protein vc1446 of vibrio cholerae.
 
 0.965
rtxC
Cytolysin-activating lysine-acyltransferase rtxc.
 
   
 0.790
tolC
TolC outer membrane protein, which is required for proper expression of outer membrane protein genes.
  
 
 0.718
hasD
Transport protein hasd.
  
 0.644
PAU_00609
Putative outer membrane protein.
 
 
 0.631
mchF-2
Probable microcin h47 secretion atp-binding protein.
 
 0.608
PAU_01805
Putative abc transporter.
  
 
 0.581
macB-2
Macrolide-specific abc-type efflux carrier protein macb; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.581
mchF
Putative microcin l transport protein; RTX transport protein.
 
 
 0.552
Your Current Organism:
Photorhabdus asymbiotica
NCBI taxonomy Id: 291112
Other names: ATCC 43950, CIP 106331, DSM 15149, P. asymbiotica, strain 3265-86
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