DICVIV_13916 protein (Dictyocaulus viviparus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DICVIV_13916

Uncharacterized protein. (97 aa)

Predicted Functional Partners:

DICVIV_00455

0.923

DICVIV_08057

0.922

DICVIV_01927

0.920

DICVIV_11063

0.919

DICVIV_02945

0.915

DICVIV_04569

0.911

DICVIV_09894

0.909

DICVIV_04651

0.909

DICVIV_05025

0.905

DICVIV_01467

0.898

Your Current Organism:

Dictyocaulus viviparus

NCBI taxonomy Id: 29172
Other names: D. viviparus, Dictyocaulus sp. AMP-2014, bovine lungworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DICVIV_00455	DICVIV_01467	A0A0D8YAW2	A0A0D8Y6M4	Uncharacterized protein.	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	0.999
DICVIV_00455	DICVIV_01927	A0A0D8YAW2	A0A0D8Y4R0	Uncharacterized protein.	Uncharacterized protein.	0.990
DICVIV_00455	DICVIV_02945	A0A0D8YAW2	A0A0D8Y8I6	Uncharacterized protein.	SEFIR domain protein.	0.999
DICVIV_00455	DICVIV_04569	A0A0D8YAW2	A0A0D8XXU9	Uncharacterized protein.	Ribosomal protein S11.	0.999
DICVIV_00455	DICVIV_04651	A0A0D8YAW2	A0A0D8Y3T3	Uncharacterized protein.	CHCH domain-containing protein.	0.990
DICVIV_00455	DICVIV_05025	A0A0D8YAW2	A0A0D8XWF8	Uncharacterized protein.	Ribosomal protein S7p/S5e.	0.999
DICVIV_00455	DICVIV_08057	A0A0D8YAW2	A0A0D8XQ75	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.999
DICVIV_00455	DICVIV_09894	A0A0D8YAW2	A0A0D8XJR4	Uncharacterized protein.	Uncharacterized protein.	0.992
DICVIV_00455	DICVIV_11063	A0A0D8YAW2	A0A0D8XE62	Uncharacterized protein.	Uncharacterized protein.	0.997
DICVIV_00455	DICVIV_13916	A0A0D8YAW2	A0A0D8X6I2	Uncharacterized protein.	Uncharacterized protein.	0.923
DICVIV_01467	DICVIV_00455	A0A0D8Y6M4	A0A0D8YAW2	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
DICVIV_01467	DICVIV_01927	A0A0D8Y6M4	A0A0D8Y4R0	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.991
DICVIV_01467	DICVIV_02945	A0A0D8Y6M4	A0A0D8Y8I6	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	SEFIR domain protein.	0.999
DICVIV_01467	DICVIV_04569	A0A0D8Y6M4	A0A0D8XXU9	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S11.	0.999
DICVIV_01467	DICVIV_04651	A0A0D8Y6M4	A0A0D8Y3T3	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	CHCH domain-containing protein.	0.988
DICVIV_01467	DICVIV_05025	A0A0D8Y6M4	A0A0D8XWF8	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S7p/S5e.	0.999
DICVIV_01467	DICVIV_08057	A0A0D8Y6M4	A0A0D8XQ75	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	MRP-S28 domain-containing protein.	0.999
DICVIV_01467	DICVIV_09894	A0A0D8Y6M4	A0A0D8XJR4	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.991
DICVIV_01467	DICVIV_11063	A0A0D8Y6M4	A0A0D8XE62	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.997
DICVIV_01467	DICVIV_13916	A0A0D8Y6M4	A0A0D8X6I2	Ribosomal protein S5 domain protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.898